Cell Division Protein Kinase 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cell Division Protein Kinase 2
  Conformer 1
(PDB)
1vyw (A)
  Conformer 2
(PDB)
1aq1  
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 249 1.74   4 - 33   58 - 70   77 - 295
2 22 2.28   34 - 57   71 - 76

Sequence


           ___________________________________33______________________57___________70____76________________________________________ 
 1vyw(A) : PLVDMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLA 
         :                                                                                                                          
 1aq1    : ****MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------vPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLA 
           ___________________________________33______________________57___________70____76________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1vyw(A) : FCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 
         :                                                                                                                          
 1aq1    : FCHSHRVLHRDLKPQNLLINTEGAIKLADFGL-------------eVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________                                                           
 1vyw(A) : KPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL                                                           
         :                                                                                                                          
 1aq1    : KPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL                                                           
           ______________________________________________________________                                                           

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
29.8
Translation
(A)
-0.1
Closure
(%)
48.3
Bending Residues
( green )
  33 - 34
  57 - 58
  70 - 71
  76 - 77
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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