Cyclin Dependent Kinase 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cyclin Dependent Kinase 2
  Conformer 1
(PDB)
1f5q (C)
  Conformer 2
(PDB)
1ckp (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 203 1.43   59 - 64   83 - 294
2 43 1.41   4 - 33   65 - 82

Sequence


           _______________________________33_____________________________64________________82______________________________________ 
 1f5q(C) : MENFQKVEK--eGTYGVVYKARN---gEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 
         :                                                                                                                          
 1ckp(A) : MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------vPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 
           _______________________________33_____________________________64________________82______________________________________ 

           ________________________________________________________________________________________________________________________ 
 1f5q(C) : HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF 
         :                                                                                                                          
 1ckp(A) : HRVLHRDLKPQNLLINTEGAIKLADFGLARAF-----------vTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________                                                               
 1f5q(C) : PKWARQDF----pPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLR*                                                               
         :                                                                                                                          
 1ckp(A) : PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL                                                               
           __________________________________________________________                                                               

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.9
Translation
(A)
0.0
Closure
(%)
96.8
Bending Residues
( green )
  33 - 59
  64 - 65
  82 - 83
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download