DNA Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Ligase
  Conformer 1
(PDB)
2owo (A)
  Conformer 2
(PDB)
1zau (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 249 2.28   62 - 316
2 59 2.73   3 - 61

Sequence


           _____________________________________________________________61_________________________________________________________ 
 2owo(A) : **MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAA-FSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLD 
         :                                                                                                                          
 1zau(A) : QTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEV--GDAAHYLCELKID 
           _____________________________________________________________70_________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2owo(A) : GLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH-GEN--IPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGE 
         :                                                                                                                          
 1zau(A) : GVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFR 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2owo(A) : LPDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVE---EDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 
         :                                                                                                                          
 1zau(A) : -PATLHQAYLALRAWGLPVSEHTTL---ATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPE********************************* 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2owo(A) : LVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTP 
         :                                                                                                                          
 1zau(A) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________________________      
 2owo(A) : ADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAP      
         :                                                                                                                          
 1zau(A) : *******************************************************************************************************************      
           ___________________________________________________________________________________________________________________      

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
147.0
Translation
(A)
1.9
Closure
(%)
91.5
Bending Residues
( green )
  61 - 62
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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