DNA Topoisomerase II, Alpha Isozyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Topoisomerase II, Alpha Isozyme
  Conformer 1
(PDB)
1zxn (A)
  Conformer 2
(PDB)
1zxm (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 241 0.62   31 - 48   52 - 266   269 - 276
2 107 0.76   49 - 51   267 - 268   288 - 404

Sequence


           __________________48____________________________________________________________________________________________________ 
 1zxn(A) : SVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTS 
         :                                                                                                                          
 1zxm(B) : SVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTS 
           __________________48____________________________________________________________________________________________________ 

           _________________________________________________________________________________________________________________264____ 
 1zxn(A) : SNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVKGFR 
         :                                                                                                                          
 1zxm(B) : SNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVKGFR 
           _________________________________________________________________________________________________________________264____ 

           _____276________________________________________________________________________________________________________________ 
 1zxn(A) : SYVDMYLK-----------vIHEQVNHRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLV----------hQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQ 
         :                                                                                                                          
 1zxm(B) : SYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNvKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQ 
           _____276________________________________________________________________________________________________________________ 

           _____________________________                                                                                            
 1zxn(A) : LSEKFIKAAIG--iVESILNWVKFKAQVQ                                                                                            
         :                                                                                                                          
 1zxm(B) : LSEKFIKAAIGCGIVESI***********                                                                                            
           _____________________________                                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.5
Translation
(A)
0.2
Closure
(%)
49.6
Bending Residues
( green )
  48 - 57
  264 - 269
  276 - 288
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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