Dual Specificity Mitogen-Activated Protein Kinase Kinase 6

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dual Specificity Mitogen-Activated Protein Kinase Kinase 6
  Conformer 1
(PDB)
3fme (A)
  Conformer 2
(PDB)
3enm (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 221 3.98   82 - 331
2 24 4.07   55 - 81

Sequence


           __________________________________81____________________________________________________________________________________ 
 3fme(A) : MEVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIR---nSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKA 
         :                                                                                                                          
 3enm(C) : **VKADDLEPI-eLGRGAYGVVEK-rHVPSGQI-aVKRIRATVNSQEQKRLL-dLDIS-rTVDCPFTVTFYGALFREGDVWIC-eL-dTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKA 
           __________________________________81____________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3fme(A) : LEHLHSKLSVIHRDVKPSNVLINALGQVKMCDF--aG-----CKPYMAPERINPELNQySVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTSQCL 
         :                                                                                                                          
 3enm(C) : LEHLHSKLSVIHRDVKPSNVLINALGQVK-cDFGISGYLVDDVkPY-aPERINPELNQ-sVKSDIWSLGIT-iELAILRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTSQCL 
           ________________________________________________________________________________________________________________________ 

           ______________________________________                                                                                   
 3fme(A) : KKNSKERPTYPELMQHPFFTLHESKGTDVASFVKLILG                                                                                   
         :                                                                                                                          
 3enm(C) : KKNSKERPTYPEL-qHPFFTLHESKGTDVASFVKLILA                                                                                   
           ______________________________________                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
64.7
Translation
(A)
-0.4
Closure
(%)
52.6
Bending Residues
( green )
  81 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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