Elongation Factor 1-Alpha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor 1-Alpha
  Conformer 1
(PDB)
1ijf (A)
  Conformer 2
(PDB)
3wxm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 215 4.93   7 - 92   98 - 103   107 - 142   144 - 239   345 - 347
2 205 2.11   93 - 97   104 - 106   143 - 143   240 - 344   348 - 439

Sequence


           _________________________________________________________________________________________92________103__________________ 
 1ijf(A) : GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 
         :                                                                                                                          
 3wxm(A) : ***KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKG 
           _________________________________________________________________________________________91________102__________________ 

           __________________142________________________________________________________________________________________________239 
 1ijf(A) : EFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS--VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRP 
         :                                                                                                                          
 3wxm(A) : EFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIERSPNMPWY------------NGPTLVEALDQLQPPAKP 
           __________________141________________________________________________________________________________________________228 

           ______________________________________________________________________________________________________344_______________ 
 1ijf(A) : TDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVL 
         :                                                                                                                          
 3wxm(A) : VDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGHL-DKPPTVAEEFEARIFVIWHPSAITVGYTPVI 
           ______________________________________________________________________________________________________332_______________ 

           ________________________________________________________________________________________                                 
 1ijf(A) : DCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDK******                                 
         :                                                                                                                          
 3wxm(A) : HVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDVKPAKVDIK                                 
           ________________________________________________________________________________________                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
33.6
Translation
(A)
-2.8
Closure
(%)
98.5
Bending Residues
( green )
  92 - 98
  103 - 109
  142 - 144
  239 - 240
  344 - 345
  347 - 348
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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