Epithelial Cadherin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Epithelial Cadherin
  Conformer 1
(PDB)
1ff5 (B)
  Conformer 2
(PDB)
2o72 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 128 0.53   11 - 18   70 - 71   75 - 76   95 - 210
2 79 0.43   4 - 10   19 - 69   72 - 74   77 - 94

Sequence


           _________10_____17__________________________________________________69___74__________________94_________________________ 
 1ff5(B) : MDWVIPPISCPENEKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 
         :                                                                                                                          
 2o72(A) : *DWVIPPISSPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVME 
           _________10_____17__________________________________________________69___74__________________94_________________________ 

           ___________________________________________________________________________________________________                      
 1ff5(B) : GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNA                      
         :                                                                                                                          
 2o72(A) : GALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAADLQGEGLSTTATAVITVTD*****                      
           ___________________________________________________________________________________________________                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.4
Translation
(A)
-0.4
Closure
(%)
55.1
Bending Residues
( green )
  10 - 11
  17 - 19
  69 - 72
  74 - 77
  94 - 95
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download