Excinuclease Abc Subunit A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Excinuclease Abc Subunit A
  Conformer 1
(PDB)
2r6f (A)
  Conformer 2
(PDB)
3ux8 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 473 2.8   456 - 946
2 22 6.37   434 - 455

Sequence


           ________________________________________________________________________________________________________________________ 
 2r6f(A) : DKIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQeKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRPICPT 
         :                                                                                                                          
 3ux8(A) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2r6f(A) : HGIEIQSQTIEQvDRLLSYPERTKqILAPiDVVVDRIIIKDGIAARLADSLETALKLADGKVVVDVIGEGELLFSEKHACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKLEVDLDL 
         :                                                                                                                          
 3ux8(A) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2r6f(A) : VIPNDELTLKEHAIAPWEPyYPQLLEAVCRHYGIPdVPVKDLPKEQLDKILYGSGGEPIYFRYTNDFGQVREQYIAFEGVIPNVERRYRETSSDYIREQeKYaEQPCPTCQGYRLKKESL 
         :                                                                                                                          
 3ux8(A) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           __________________________________455___________________________________________________________________________________ 
 2r6f(A) : AVLVGGKHIGEVTAsVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSrDLGNTL 
         :                                                                                                                          
 3ux8(A) : ************DKIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESpDVDAIEGLSPAISIDQKTrSTVGTVTEIYsViRDRLGFLQNVGLDYLTLSRS 
           ___________________________________26___________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2r6f(A) : IVVEHDEDTlAADYLIDIGPGAGIHGGEVVAAGTPEEVnDPNSLTGQYLS-GKKFIPIPAERRRPDG-RWLEVVGAREHNLKNVSVKIPLGTFVAVT-GVSGSGKSTLVNEVLYKALAQK 
         :                                                                                                                          
 3ux8(A) : AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2r6f(A) : LHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEhFLPDVYVPCEVCHGKRYNRETLEVTYKGK 
         :                                                                                                                          
 3ux8(A) : RRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQS-----------PIGRTPRSNPATYTGVFDDIRDV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2r6f(A) : NIAEVLDtVEDALDFFASIPKIKRKLETLYDVGLGYkLGQPATTLSGGEAQRVKLAAELHRRSN-GRTLYILDEPTTGLHVDDIARLLDVLHRL-VDNGDTVLVIEHNLDVIKTADYIID 
         :                                                                                                                          
 3ux8(A) : FASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIvPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHR 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2r6f(A) : LGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLKPILERDRARqARYEA*********************************************************************** 
         :                                                                                                                          
 3ux8(A) : RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLKPILERDRARMQAR-------------YEA 
           ________________________________________________________________________________________________________________________ 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
111.7
Translation
(A)
-2.0
Closure
(%)
92.7
Bending Residues
( green )
  455 - 463
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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