Flavocytochrome C Fumarate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Flavocytochrome C Fumarate Reductase
  Conformer 1
(PDB)
1d4c (B)
  Conformer 2
(PDB)
1d4c (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 444 0.4   5 - 87   90 - 367   369 - 379   430 - 434   438 - 438   501 - 568
2 118 0.35   88 - 89   368 - 368   380 - 429   435 - 437   439 - 500

Sequence


           ___________________________________________________________________________________87___________________________________ 
 1d4c(B) : EVLADFHGEMGGCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAPK--vSPHKSHLIGEIACTSCHKGHEKSVAYCDACHSFGFDMPFGGKWERKFVPVDADKAAQDKAIAAGV 
         :                                                                                                                          
 1d4c(C) : EVLADFHGEMGGCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAPKDKVSPHKSHLIGEIACTSCHKGHEKSVAYCDACHSFGFDMPFGGKWERKFVPVDADKAAQDKAIAAGV 
           ___________________________________________________________________________________87___________________________________ 

           ________________________________________________________________________________________________________________________ 
 1d4c(B) : KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNR 
         :                                                                                                                          
 1d4c(C) : KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNR 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1d4c(B) : SHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEYIQ 
         :                                                                                                                          
 1d4c(C) : SHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEYIQ 
           ________________________________________________________________________________________________________________________ 

           __367_________379_______________________________________________429__434________________________________________________ 
 1d4c(B) : AHPTYSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERP 
         :                                                                                                                          
 1d4c(C) : AHPTYSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERP 
           __367_________379_______________________________________________429__434________________________________________________ 

           ______________499_______________________________________________________________________                                 
 1d4c(B) : DLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFAKD                                 
         :                                                                                                                          
 1d4c(C) : DLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFAKD                                 
           ______________499_______________________________________________________________________                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.7
Translation
(A)
0.1
Closure
(%)
98.6
Bending Residues
( green )
  87 - 90
  367 - 369
  379 - 380
  429 - 430
  434 - 435
  437 - 439
  499 - 501
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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