Gamma-Delta Resolvase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gamma-Delta Resolvase
  Conformer 1
(PDB)
1gdt (A)
  Conformer 2
(PDB)
2rsl (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 84 1.07   6 - 96
2 21 0.95   97 - 117

Sequence


           ______________________________________________________________________________________________96________________________ 
 1gdt(A) : MRLFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQ 
         :                                                                                                                          
 2rsl(A) : MRLFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDK-------rKGLDLLRMkVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQ 
           ______________________________________________________________________________________________96________________________ 

           _______________________________________________________________                                                          
 1gdt(A) : RILERTNEGRQEAMAKGVVFGRKRKIDRDAVLNMWQQGLGASHISKTMNIARSTVYKVINESN                                                          
         :                                                                                                                          
 2rsl(A) : RI*************************************************************                                                          
           _______________________________________________________________                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.0
Translation
(A)
0.0
Closure
(%)
34.7
Bending Residues
( green )
  96 - 97
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download