Gamma-Crystallin D

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gamma-Crystallin D
  Conformer 1
(PDB)
4gr7 (X)
  Conformer 2
(PDB)
1hk0 (X)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 88 0.3   55 - 55   82 - 168
2 81 0.41   3 - 54   56 - 81   169 - 171

Sequence


           ____________________________________________________54_________________________81_______________________________________ 
 4gr7(X) : GKITLYEDRGFQGRHYECSSDHPNLQPYLSRCNSARVDSGCRMLYEQPNYSGLQYFLRRGDYADHQQWMGLSDSVRSCRLIPHSGSHRIRLYEREDYRGQMIEFTEDCSCLQDRFRFNEI 
         :                                                                                                                          
 1hk0(X) : GKITLYEDRGFQGRHYECSSDHPNLQPYLSRCNSARVDSGCWMLYEQPNYSGLQYFLRRGDYADHQQWMGLSDSVRSCRLIPHSGSHRIRLYEREDYRGQMIEFTEDCSCLQDRFRFNEI 
           ____________________________________________________54_________________________81_______________________________________ 

           _____________________________________________168_____                                                                    
 4gr7(X) : HSLNVLEGSWVLYELSNYRGRQYLLMPGDYRRYQDWGATNARVGSLRRVIDFS                                                                    
         :                                                                                                                          
 1hk0(X) : HSLNVLEGSWVLYELSNYRGRQYLLMPGDYRRYQDWGATNARVGSLRRVIDFS                                                                    
           _____________________________________________169_____                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.3
Translation
(A)
-0.3
Closure
(%)
98.7
Bending Residues
( green )
  54 - 56
  81 - 82
  168 - 171
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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