Gluconate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gluconate Kinase
  Conformer 1
(PDB)
1knq (A)
  Conformer 2
(PDB)
1kof (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 106 0.48   7 - 35   72 - 112   136 - 171
2 28 0.44   38 - 65
3 23 0.81   113 - 135

Sequence


           ______________________________34_____________________________65____________________________________________112__________ 
 1knq(A) : TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLK 
         :                                                                                                                          
 1kof(A) : TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLK 
           ______________________________34_____________________________65____________________________________________112__________ 

           __________135______________________________________                                                                      
 1knq(A) : ARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKK                                                                      
         :                                                                                                                          
 1kof(A) : ARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKK                                                                      
           __________135______________________________________                                                                      

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.5
Translation
(A)
0.5
Closure
(%)
90.6
Bending Residues
( green )
  34 - 38
  65 - 72
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
8.0
Translation
(A)
0.2
Closure
(%)
6.2
Bending Residues
( green )
  112 - 113
  135 - 136
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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