Glutamate Receptor, Ionotropic Kainate 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 3
  Conformer 1
(PDB)
3u94 (B)
  Conformer 2
(PDB)
1fto (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 140 1.47   7 - 108   214 - 249   251 - 252
2 107 1.39   109 - 213   250 - 250   253 - 253

Sequence


           _______________________________________________________________________________________________________108______________ 
 3u94(B) : RSLIVTTLLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQD-DKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKGTPIDS 
         :                                                                                                                          
 1fto(A) : *TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIES 
           _______________________________________________________________________________________________________109______________ 

           ___________________________________________________________________________________________212__________________________ 
 3u94(B) : ADDLAKQTKIEYGAVKDGATMTFFKKSKISTFEKMWAFM-SSKPSALVKNNEEGIQRTLTAD--YALLMESTTIEYITQRN-CNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQE 
         :                                                                                                                          
 1fto(A) : AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNE 
           ___________________________________________________________________________________________217__________________________ 

           ________249________                                                                                                      
 3u94(B) : EDKLHIMKEKWWRGSG-CP                                                                                                      
         :                                                                                                                          
 1fto(A) : QGLLDKLKNKWWYDKGEC*                                                                                                      
           ________254________                                                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
25.6
Translation
(A)
0.1
Closure
(%)
92.9
Bending Residues
( green )
  108 - 109
  212 - 214
  249 - 253
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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