Glutamate Receptor Ionotropic, Nmda 2A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Ionotropic, Nmda 2A
  Conformer 1
(PDB)
4nf5 (B)
  Conformer 2
(PDB)
2a5s (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 163 0.72   9 - 135   241 - 282
2 106 1.83   136 - 240   283 - 283

Sequence


           ________________________________________________________________________________________________________________________ 
 4nf5(B) : NHLSIVTLEEAPFVIVEDI-----cVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDF 
         :                                                                                                                          
 2a5s(A) : NHLSIVTLEEAPFVIVEDIDPLeTCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDF 
           ________________________________________________________________________________________________________________________ 

           _____135________________________________________________________________________________________________234_____________ 
 4nf5(B) : SVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGI 
         :                                                                                                                          
 2a5s(A) : SVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGI 
           _____135________________________________________________________________________________________________234_____________ 

           ______________________________280_____                                                                                   
 4nf5(B) : ALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTGICH                                                                                   
         :                                                                                                                          
 2a5s(A) : ALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTGICH                                                                                   
           ______________________________280_____                                                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.8
Translation
(A)
0.3
Closure
(%)
99.8
Bending Residues
( green )
  135 - 136
  234 - 243
  280 - 283
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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