Glutamate Receptor Ionotropic, Nmda 2A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Ionotropic, Nmda 2A
  Conformer 1
(PDB) 		4nf5 (B)
  Conformer 2
(PDB) 		4nf6 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 164 0.57   9 - 133   170 - 172   192 - 194   243 - 281
2 104 0.4   134 - 169   173 - 191   195 - 242   282 - 282

Sequence


           ________________________________________________________________________________________________________________________ 
 4nf5(B) : **NHLSIVTLEEAPFVIVEDI----cVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVD 
         :                                                                                                                          
 4nf6(B) : DDNHLSIVTLEEAPFVIVEDIDtETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVD 
           ________________________________________________________________________________________________________________________ 

           ____133_________________________________169___________________191________________________________________________242____ 
 4nf5(B) : FSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYG 
         :                                                                                                                          
 4nf6(B) : FSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYG 
           ____133_________________________________169___________________191________________________________________________242____ 

           ________________________________281____                                                                                  
 4nf5(B) : IALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTGICH                                                                                  
         :                                                                                                                          
 4nf6(B) : IALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTGIC*                                                                                  
           ________________________________281____                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.5
Translation
(A) 		-0.1
Closure
(%) 		99.8
Bending Residues
( green ) 		  133 - 134
  169 - 170
  172 - 176
  191 - 192
  194 - 195
  242 - 243
  281 - 282
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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