Glutamate Receptor, Ionotropic Kainate 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 2
  Conformer 1
(PDB)
1yae (B)
  Conformer 2
(PDB)
1s50 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 140 0.74   431 - 532   763 - 800
2 111 1.06   533 - 762   801 - 802

Sequence


           ___________________________________________________________________________________________________________532__________ 
 1yae(B) : NITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILY 
         :                                                                                                                          
 1s50(A) : ******SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILY 
           ___________________________________________________________________________________________________________105__________ 

           ________________________________________________________________________________________________761_____________________ 
 1yae(B) : RKPN-iDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAI 
         :                                                                                                                          
 1s50(A) : RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAI 
           ________________________________________________________________________________________________214_____________________ 

           _______________800______                                                                                                 
 1yae(B) : LQLQEEGKLHMMKEKWWRGNGC**                                                                                                 
         :                                                                                                                          
 1s50(A) : LQLQEEGKLHMMKEKWWRGNGCPE                                                                                                 
           _______________253______                                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.3
Translation
(A)
-0.1
Closure
(%)
86.2
Bending Residues
( green )
  532 - 533
  761 - 763
  800 - 801
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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