3-Isopropylmalate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Isopropylmalate Dehydrogenase
  Conformer 1
(PDB)
1xaa (A)
  Conformer 2
(PDB)
1a05 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 191 1.95   3 - 103   111 - 115   258 - 342
2 149 1.12   104 - 110   116 - 257

Sequence


           _____________________________________________________________________________________________________103_107_____115____ 
 1xaa(A) : *MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLK 
         :                                                                                                                          
 1a05(A) : MKKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLR 
           _____________________________________________________________________________________________________104_108_____116____ 

           ________________________________________________________________________________________________________________________ 
 1xaa(A) : EEIARGVDVLIVRELTGGIYFGEPRGM----SEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVT 
         :                                                                                                                          
 1a05(A) : PELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMVYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLETTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLT 
           ________________________________________________________________________________________________________________________ 

           ___________________257_______________________________________________________________________________________________    
 1xaa(A) : GNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKAL---LETPPPDLGGSA--GTEAFTATVLRHLA**    
         :                                                                                                                          
 1a05(A) : GNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPIHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEAAVQRVLDQGLRTADIAAPGTPVIGTKAMGAAVVNALNLK    
           ___________________262_______________________________________________________________________________________________    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
24.1
Translation
(A)
-0.1
Closure
(%)
95.7
Bending Residues
( green )
  103 - 104
  107 - 111
  115 - 116
  257 - 258
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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