Glycine Betaine/carnitine/choline-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycine Betaine/carnitine/choline-Binding Protein
  Conformer 1
(PDB) 		3r6u (A)
  Conformer 2
(PDB) 		5nxy (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 162 0.5   17 - 113   201 - 207   221 - 278
2 100 0.42   114 - 200   208 - 220

Sequence


           ___________________________________________________________________________________________________113__________________ 
 3r6u(A) : QTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTIKNLGSNAVQQQALMNGEIDIAATRYTGDALTGTLRMEPEKDPDKALALTQREFKKRYDLKWYDSYGFDNTYAFTVSKELADQYHL 
         :                                                                                                                          
 5nxy(A) : QTIKIGAQSMSESEIIASMQGQLIEHHTDLKTTTIKNLGSNAVQQQALMNGEIDIAATRYTGDALTGTLRMEPEKDPDKALALTQREFKKRYDLKWYDSYGFDNTYAFTVSKELADQYHL 
           ___________________________________________________________________________________________________105__________________ 

           __________________________________________________________________200____207__________220_______________________________ 
 3r6u(A) : ETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTYGMTFGGTYPMQIGLVYDAVKSGKMDIVLAYSTDGRIKSYGLKMLKDDKQFFPPYDCSPVVPEKVLKEHPELEGIIKKMLGKIDT 
         :                                                                                                                          
 5nxy(A) : ETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTYGMTFGGTYPMQIGLVYDAVKSGKMDIVLAYSTDGRIKSYGLKMLKDDKQFFPPYDCSPVVPEKVLKEHPELEGIIKKMLGKIDT 
           __________________________________________________________________192____199__________212_______________________________ 

           ________________________________                                                                                         
 3r6u(A) : ATMQELNYEVDGNLKEPSVVAKEYLEKHRYFE                                                                                         
         :                                                                                                                          
 5nxy(A) : ATMQELNYEVDGNLKEPSVVAKEYLEKHRYFE                                                                                         
           ________________________________                                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.1
Translation
(A) 		0.1
Closure
(%) 		89.0
Bending Residues
( green ) 		  113 - 114
  200 - 201
  207 - 209
  220 - 221
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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