Enterochelin Uptake Periplasmic Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Enterochelin Uptake Periplasmic Binding Protein
  Conformer 1
(PDB) 		2chu (A)
  Conformer 2
(PDB) 		3zkw (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 254 0.77   28 - 190   199 - 248   262 - 306
2 21 0.66   191 - 198   249 - 261

Sequence


           ________________________________________________________________________________________________________________________ 
 2chu(A) : LPISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLPKYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNANFL 
         :                                                                                                                          
 3zkw(A) : LPISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLPKYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNANFL 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________190____197________________________________________________248__________261__ 
 2chu(A) : SSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKISAFGPQSRFGIIHDVLGINAVDENIK----gKSINSEFILEKNPDYIFVVDRNVILGNKERAQGIL 
         :                                                                                                                          
 3zkw(A) : SSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKISAFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVVDRNVILGNKERAQGIL 
           ____________________________________________190____197________________________________________________248__________261__ 

           _______________________________________________                                                                          
 2chu(A) : DNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK                                                                          
         :                                                                                                                          
 3zkw(A) : DNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK                                                                          
           _______________________________________________                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.2
Translation
(A) 		-0.6
Closure
(%) 		5.3
Bending Residues
( green ) 		  190 - 191
  197 - 199
  248 - 249
  261 - 262
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download