DynDom - Protein Domain Motions

Fumarate Reductase Flavoprotein Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Fumarate Reductase Flavoprotein Subunit
Conformer 1 (PDB)	3p4p (A)
Conformer 2 (PDB)	6c12 (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	398	3.05	2 - 230 355 - 567
2	113	1.94	231 - 354

Sequence

`________________________________________________________________________________________________________________________` `3p4p(A) : *MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFG` `:` `6c12(A) : MKLPVREFDAVVIGAGGAGMRAALQISQSGQTC--ALLSKVFPTRSHTVSAQG--------------hMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPF--------------` `________________________________________________________________________________________________________________________` `_______________________________________________________________________________________________________________230______` `3p4p(A) :` `GMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGL` `:` `6c12(A) :` `----------aDRTGHALLHTLYQQNLK-NHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGI` `_______________________________________________________________________________________________________________240______` `___________________________________________________________________________________________________________________354__` `3p4p(A) : PGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHY` `:` `6c12(A) : AGAGVLVTEGCRGEGGYLLNKHGERFMERYA---------PNAK--DLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHY` `___________________________________________________________________________________________________________________353__` `________________________________________________________________________________________________________________________` `3p4p(A) : TMGGIET----------DQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIY` `:` `6c12(A) : MMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDAS-ESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVF` `________________________________________________________________________________________________________________________` `_______________________________________________________________________________________________________________` `3p4p(A) : RTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPA` `:` `6c12(A) : REGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFD--FPDRDDENWLCHSLYLPESESMTRRSVNMEPKLRPAFPP` `_______________________________________________________________________________________________________________`

Morph

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Status: Initialising

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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	36.2
Translation (A)	0.5
Closure (%)	79.0
Bending Residues ( green )	230 - 231 354 - 355
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

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