Gamma-Aminobutyric Acid Type B Receptor Subunit 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gamma-Aminobutyric Acid Type B Receptor Subunit 1
  Conformer 1
(PDB) 		4mqe (A)
  Conformer 2
(PDB) 		4ms4 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 215 0.81   52 - 172   313 - 414
2 185 0.6   173 - 312   415 - 459

Sequence


           ________________________________________________________________________________________________________________________ 
 4mqe(A) : SERRAVYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFF 
         :                                                                                                                          
 4ms4(A) : **RRAVYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFF 
           ________________________________________________________________________________________________________________________ 

           __172___________________________________________________________________________________________________________________ 
 4mqe(A) : RTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKIY 
         :                                                                                                                          
 4ms4(A) : RTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKIY 
           __172___________________________________________________________________________________________________________________ 

           ____________________310_________________________________________________________________________________________410_____ 
 4mqe(A) : DPSINCTVDEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRLKRHPEETGGFQEAPLAYDAIWALALALNKTSrLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGS 
         :                                                                                                                          
 4ms4(A) : DPSINCTVDEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRLKRHPEETGGFQEAPLAYDAIWALALALNKTSrLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGS 
           ____________________310_________________________________________________________________________________________410_____ 

           __________________________________________________                                                                       
 4mqe(A) : RMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPADDYKDD*                                                                       
         :                                                                                                                          
 4ms4(A) : RMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPADDYKDDD                                                                       
           __________________________________________________                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		28.6
Translation
(A) 		-0.2
Closure
(%) 		97.3
Bending Residues
( green ) 		  172 - 173
  310 - 313
  410 - 420
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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