Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Dehydrogenase
  Conformer 1
(PDB) 		5xvv (A)
  Conformer 2
(PDB) 		5xvv (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 234 0.5   5 - 191   381 - 411   443 - 458
2 220 0.34   192 - 380   412 - 442

Sequence


           ________________________________________________________________________________________________________________________ 
 5xvv(A) : NLPHEPEFEQAYKELASTLENSTLFQKNPEYRKALAVVSVPERVIQFRVVWEDDAGNVQVNRGFRVQFNSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLNMGGGKGGSDFDPK 
         :                                                                                                                          
 5xvv(D) : NLPHEPEFEQAYKELASTLENSTLFQKNPEYRKALAVVSVPERVIQFRVVWEDDAGNVQVNRGFRVQFNSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLNMGGGKGGSDFDPK 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________191___________________________________________________ 
 5xvv(A) : GKSDNEIRRFCVSFMTELCKHIGADTDVPAGDIGVTGREVGFLFGQYRKIRNQWEGVLTGKGGSWGGSLIRPEATGYGVVYYVEHMIAHATNGQESFKGKRVAISGSGNVAQYAALKVIE 
         :                                                                                                                          
 5xvv(D) : GKSDNEIRRFCVSFMTELCKHIGADTDVPAGDIGVTGREVGFLFGQYRKIRNQWEGVLTGKGGSWGGSLIRPEATGYGVVYYVEHMIAHATNGQESFKGKRVAISGSGNVAQYAALKVIE 
           __________________________________________________________________191___________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5xvv(A) : LGGSVVSLSDSQGSLIINGEGSFTPEEIELIAQTKVERKQLASIVGAAPFSDANKFKYIAGARPWVHVGKVDVALPSATQNEISGEEAQVLINAGCKFIAEGSNMGCTQEAIDTFEAHRT 
         :                                                                                                                          
 5xvv(D) : LGGSVVSLSDSQGSLIINGEGSFTPEEIELIAQTKVERKQLASIVGAAPFSDANKFKYIAGARPWVHVGKVDVALPSATQNEISGEEAQVLINAGCKFIAEGSNMGCTQEAIDTFEAHRT 
           ________________________________________________________________________________________________________________________ 

           _____________378___________________________408_______________________________442__________________                       
 5xvv(A) : ANAGAAAIWYAPGKAANAGGVAVSGLEMAQNSARLSWTSEEVDARLKDIMRDCFKNGLETAQEYATPAEGVLPSLVTGSNIAGFTKVAAAMKDQGDWW                       
         :                                                                                                                          
 5xvv(D) : ANAGAAAIWYAPGKAANAGGVAVSGLEMAQNSARLSWTSEEVDARLKDIMRDCFKNGLETAQEYATPAEGVLPSLVTGSNIAGFTKVAAAMKDQGDWW                       
           _____________378___________________________408_______________________________442__________________                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		19.1
Translation
(A) 		-0.5
Closure
(%) 		98.3
Bending Residues
( green ) 		  191 - 195
  378 - 387
  408 - 416
  442 - 448
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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