Hypothetical Oxidoreductase Yiak

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Oxidoreductase Yiak
  Conformer 1
(PDB) 		1nxu (A)
  Conformer 2
(PDB) 		1s20 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 134 0.52   89 - 91   99 - 103   105 - 106   121 - 136   138 - 176   196 - 197   205 - 206   218 - 247   265 - 307
2 144 0.49   4 - 88   92 - 98   104 - 104   107 - 120   137 - 137   248 - 264   308 - 330
3 35 0.92   178 - 195   198 - 204   207 - 217

Sequence


           ____________________________________________________________________________________88_91___98__103_____________120_____ 
 1nxu(A) : KVTFEQLKAAFNRVLISRGVDSETADACAEfARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKdRAIELAADHGIGLVALRNANHWrGGSYGW 
         :                                                                                                                          
 1s20(A) : KVTFEQLKAAFNRVLISRGVDSETADACAEfARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKdRAIELAADHGIGLVALRNANHWrGGSYGW 
           ____________________________________________________________________________________88_91___98__103_____________120_____ 

           ________136_________________________________176______________195______204__________217________________________247_______ 
 1nxu(A) : QAAEKGYIGICWTNSIAVpPWGAKECRIGTNPLIVAIPSTPITvDssfSYGlEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPgYWKGSGsIVLDiATLLSDGASVAEVTQDNS 
         :                                                                                                                          
 1s20(A) : QAAEKGYIGICWTNSIAVpPWGAKECRIGTNPLIVAIPSTPITvDssfSYGlEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPgYWKGSGsIVLDiATLLSDGASVAEVTQDNS 
           ________136_________________________________176______________195______204__________217________________________247_______ 

           _______264_______________________________________307___________________________                                          
 1nxu(A) : DEYGISQIFIAIEVDKLIDGPTRDAKLQRIdYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL**                                          
         :                                                                                                                          
 1s20(A) : DEYGISQIFIAIEVDKLIDGPTRDAKLQRIdYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQALLE                                          
           _______264_______________________________________307___________________________                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.5
Translation
(A) 		0.0
Closure
(%) 		85.8
Bending Residues
( green ) 		  88 - 89
  91 - 92
  98 - 99
  103 - 107
  120 - 121
  136 - 138
  247 - 249
  264 - 265
  307 - 310
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		12.8
Translation
(A) 		0.0
Closure
(%) 		99.5
Bending Residues
( green ) 		  176 - 178
  195 - 198
  204 - 207
  217 - 218
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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