Iron Abc Transporter, Periplasmic Iron-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Iron Abc Transporter, Periplasmic Iron-Binding Protein
  Conformer 1
(PDB) 		4elo (A)
  Conformer 2
(PDB) 		4elr (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 152 0.5   120 - 246   298 - 307   314 - 328
2 149 0.84   25 - 119   247 - 297   311 - 313

Sequence


           ________________________________________________________________________________________________119_____________________ 
 4elo(A) : **TLTIYSGRGQSLVEPLVKQFEAETGIRVQVRYSTDAQILAALQEEGSRSPADLFWANTAGALGQASAKGLLRPLGETLLEKPIAFVPASRTWVPVTVRLRVLAYNPDRIKAEELPESL 
         :                                                                                                                          
 4elr(A) : SPTLTIYSGRGQSLVEPLVKQFEAETGIRVQVRYSTDAQILAALQEEGSRSPADLFWANTAGALGQASAKGLLRPLGETLLEKPIAFVPASRTWVPVTVRLRVLAYNPDRIKAEELPESL 
           ________________________________________________________________________________________________119_____________________ 

           _____________________________________________________________________________________________________244________________ 
 4elo(A) : LDLPRFAREKGLVGRVGWTPTYSSFQDMVAGMIALYGEEKTREWLLAMKALAPKAYPSNPAMLDAIRAGEVDLGSTNHYYVVRFRRAGYRLGMHHFRDGDAGNLALVTGAGLLKTSKNLA 
         :                                                                                                                          
 4elr(A) : LDLPRFAREKGLVGRVGWTPTYSSFQDMVAGMIALYGEEKTREWLLAMKALAPKAYPSNPAMLDAIRAGEVDLGSTNHYYVVRFRRAGYRLGMHHFRDGDAGNLALVTGAGLLKTSKNLA 
           _____________________________________________________________________________________________________244________________ 

           ________________________287_______________________313_________________                                                   
 4elo(A) : AATRFLTYLLSPQAQQYFVGNIGEYPLVKGVALDPNLLPLEEALAKSPKLDLEKLPLDRALRLLRETGVL                                                   
         :                                                                                                                          
 4elr(A) : AATRFLTYLLSPQAQQYFVGNIGEYPLVKGVALDPNLLPLEEALAKSPKLDLEKLPLDRALRLLRETGVL                                                   
           ________________________287_______________________313_________________                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		19.6
Translation
(A) 		-0.4
Closure
(%) 		94.7
Bending Residues
( green ) 		  119 - 120
  244 - 247
  287 - 311
  313 - 314
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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