Kinesin-Like Protein Kif1a

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Kinesin-Like Protein Kif1a
  Conformer 1
(PDB) 		1i5s (A)
  Conformer 2
(PDB) 		1vfw (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 275 1.74   7 - 166   170 - 215   218 - 248   252 - 274   318 - 349
2 37 2.2   167 - 169   216 - 217   249 - 251   275 - 317

Sequence


           ________________________________________________________________________________________________________________________ 
 1i5s(A) : ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 
         :                                                                                                                          
 1vfw(A) : ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 
           ________________________________________________________________________________________________________________________ 

           ________________________________________166________________________________201__________________________________________ 
 1i5s(A) : EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSK 
         :                                                                                                                          
 1vfw(A) : EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAAT----tSSRSHAVFNIIFTQKRHDAETNITTEKVSK 
           ________________________________________166________________________________201__________________________________________ 

           __248__________________274___________________________317_____________________________________________                    
 1i5s(A) : ISLVDLAGSERAkGTRLKEGANINKSLTTLGKVISALAEMD-iPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK**********                    
         :                                                                                                                          
 1vfw(A) : ISLVDLAGSER--------gANINKSLTTLGKVISALAEMdFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH                    
           __248__________________274___________________________317_____________________________________________                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		19.8
Translation
(A) 		-0.5
Closure
(%) 		61.6
Bending Residues
( green ) 		  166 - 167
  169 - 170
  201 - 218
  248 - 249
  251 - 252
  274 - 275
  317 - 318
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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