Lipopolysaccharide Heptosyltransferase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lipopolysaccharide Heptosyltransferase 1
  Conformer 1
(PDB) 		2h1h (B)
  Conformer 2
(PDB) 		2gt1 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 172 0.62   3 - 174
2 139 0.5   175 - 318

Sequence


           ________________________________________________________________________________________________________________________ 
 2h1h(B) : MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAKNYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAR 
         :                                                                                                                          
 2gt1(A) : MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAKNYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAR 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________174__________________________________________________________________ 
 2h1h(B) : EPLASLFYNRKHHIAKQQHAVERTRELFAKSLGYSKPQTQGDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLP 
         :                                                                                                                          
 2gt1(A) : EPLASLFYNRKHHIAKQQHAVERTRELFAKSLGYSKPQTQGDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLP 
           ___________________________________________________174__________________________________________________________________ 

           ___________________________________________________________________________________                                      
 2h1h(B) : KMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDP-----yGKNQMVCRAPGNELSQLTANAVKQFIEENA***                                      
         :                                                                                                                          
 2gt1(A) : KMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEKA                                      
           ___________________________________________________________________________________                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.1
Translation
(A) 		0.0
Closure
(%) 		1.2
Bending Residues
( green ) 		  174 - 175
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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