Liver Alcohol Dehydrogenase (E.C.1.1.1.1)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Liver Alcohol Dehydrogenase (E.C.1.1.1.1)
  Conformer 1
(PDB) 		6adh (A)
  Conformer 2
(PDB) 		7adh  
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 225 0.88   4 - 169   173 - 173   293 - 296   317 - 339   341 - 371
2 143 0.83   170 - 172   174 - 292   297 - 316   340 - 340

Sequence


           ________________________________________________________________________________________________________________________ 
 6adh(A) : STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 
         :                                                                                                                          
 7adh    : STAGXvIXcXaAVLWEEXXpFSIEEVEVAPPXaHEVRIXmVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDXvIPLFTPQCGXcRVCKHPEGNFCLXnDLSMPR 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________169_______________________________________________________________________ 
 6adh(A) : GTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATEC 
         :                                                                                                                          
 7adh    : GTMQDGTSRFTCRGXpIHHFLGTSTFSQYTVVDEISVAXiDAASPLEXvCLIGCGFSTGYGSAVXvAXvTQGSTCAVFGLGGVGLSVIMGCXaAGAARIIGVDINXdXfAXaKEVGATEC 
           ______________________________________________169_______________________________________________________________________ 

           _________________________________________________292_____________________316____________________339_____________________ 
 6adh(A) : VNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFD 
         :                                                                                                                          
 7adh    : VNPQDYXkPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSXdSVPXlVADFMAKKFALDPLITHVLPFEXiNEGFD 
           _________________________________________________292_____________________316____________________339_____________________ 

           ______________                                                                                                           
 6adh(A) : LLRSGESIRTILTF                                                                                                           
         :                                                                                                                          
 7adh    : LLRSGESIRTILTF                                                                                                           
           ______________                                                                                                           

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.1
Translation
(A) 		-0.2
Closure
(%) 		82.5
Bending Residues
( green ) 		  169 - 170
  172 - 174
  292 - 297
  316 - 317
  339 - 341
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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