Manganese-Binding Lipoprotein Mnta

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Manganese-Binding Lipoprotein Mnta
  Conformer 1
(PDB) 		5hx7 (A)
  Conformer 2
(PDB) 		5jpd (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 170 0.69   34 - 181   183 - 183   209 - 210   227 - 228   279 - 298
2 98 0.78   182 - 182   184 - 208   211 - 226   231 - 278   299 - 308

Sequence


           ________________________________________________________________________________________________________________________ 
 5hx7(A) : *KLNVVATYSILADIVKNVGGNKIELHSIVPVGVDPHEYDPLPANIQSAADADLIFYNGLNLETGNGWFDRlETADKSREDKNQVVELSKGVKPKYLTEKGKTSETDPHAWLDLHNGIIY 
         :                                                                                                                          
 5jpd(A) : GKLNVVATYSILADIVKNVGGNKIELHSIVPVGVDPHEYDPLPANIQSAADADLIFYNGLNLETGNGWFDRlETADKSREDKNQVVELSKGVKPKYLTEKGKTSETDPHAWLDLHNGIIY 
           ________________________________________________________________________________________________________________________ 

           ___________________________181________________________208______________225______________________________________________ 
 5hx7(A) : TENVRDALVKADPDNADFYKENAKKYIDKLATLDKEAKQKFADLPENQKTLVTSEGAFKYFAARYGLKAAYIWEINTESQGTPDQkQIVGIVEKEKVPNLFVETSVDPRSeSVSKETGVP 
         :                                                                                                                          
 5jpd(A) : TENVRDALVKADPDNADFYKENAKKYIDKLATLDKEAKQKFADLPENQKTLVTSEGAFKYFAARYGLKAAYIWEINTESQGTPDQkQIVGIVEKEKVPNLFVETSVDPRSeSVSKETGVP 
           ___________________________181________________________208______________225______________________________________________ 

           __278_______________298____________                                                                                      
 5hx7(A) : IFAKIFTDSTAKKGEVGDTYLErYNLDKIHDGLAK                                                                                      
         :                                                                                                                          
 5jpd(A) : IFAKIFTDSTAKKGEVGDTYLErYNLDKIHDGLAK                                                                                      
           __278_______________298____________                                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.5
Translation
(A) 		-0.4
Closure
(%) 		99.3
Bending Residues
( green ) 		  181 - 184
  208 - 211
  225 - 231
  278 - 279
  298 - 299
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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