Mhc Class I Histocompatibility Antigen (Hla- A0201) (Alpha Chain)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mhc Class I Histocompatibility Antigen (Hla- A0201) (Alpha Chain)
  Conformer 1
(PDB) 		1akj (A)
  Conformer 2
(PDB) 		2clr (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 146 0.43   3 - 109   113 - 127   139 - 142   158 - 159   161 - 178
2 30 0.55   110 - 112   128 - 138   143 - 157   160 - 160
3 95 0.62   179 - 273

Sequence


           __________________________________________________________________________________________________________109___________ 
 1akj(A) : GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDG 
         :                                                                                                                          
 2clr(D) : GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDG 
           __________________________________________________________________________________________________________109___________ 

           ____127________138_142____________157__________________178______________________________________________________________ 
 1akj(A) : KDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT 
         :                                                                                                                          
 2clr(D) : KDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT 
           ____127________138_142____________157__________________178______________________________________________________________ 

           ____________________________________                                                                                     
 1akj(A) : FQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP                                                                                     
         :                                                                                                                          
 2clr(D) : FQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE*                                                                                     
           ____________________________________                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.6
Translation
(A) 		-0.1
Closure
(%) 		96.0
Bending Residues
( green ) 		  109 - 113
  127 - 128
  138 - 139
  142 - 143
  157 - 161
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		6.3
Translation
(A) 		-0.3
Closure
(%) 		99.8
Bending Residues
( green ) 		  178 - 179
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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