Nad-Dependent Formate Dehydrogenase (E.C.1.2.1.2)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nad-Dependent Formate Dehydrogenase (E.C.1.2.1.2)
  Conformer 1
(PDB) 		2nac (A)
  Conformer 2
(PDB) 		2nad (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 184 0.46   150 - 333
2 165 0.26   3 - 9   31 - 149   334 - 372

Sequence


           ________________________________________________________________________________________________________________________ 
 2nac(A) : AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTA 
         :                                                                                                                          
 2nad(B) : AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTA 
           ________________________________________________________________________________________________________________________ 

           _________________________148____________________________________________________________________________________________ 
 2nac(A) : GIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHAT 
         :                                                                                                                          
 2nad(B) : GIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHAT 
           _________________________148____________________________________________________________________________________________ 

           __________________________________________________________________________________________333___________________________ 
 2nac(A) : REDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRP 
         :                                                                                                                          
 2nad(B) : REDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRP 
           __________________________________________________________________________________________333___________________________ 

           _______________________                                                                                                  
 2nac(A) : IRDEYLIVQGGALA*********                                                                                                  
         :                                                                                                                          
 2nad(B) : IRDEYLIVQGGALAGTGAHSYSK                                                                                                  
           _______________________                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.9
Translation
(A) 		0.4
Closure
(%) 		83.8
Bending Residues
( green ) 		  148 - 150
  333 - 339
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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