Pectocin M2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Pectocin M2
  Conformer 1
(PDB) 		4n58 (A)
  Conformer 2
(PDB) 		4n59 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 146 1.63   116 - 269
2 107 1.06   4 - 110

Sequence


           ____________________________________________________________________________________________________104_________________ 
 4n58(A) : ATYKVKDVTTGAEIEVPDDKYILDEFEKQGVNLPYSCRAGACSSCVALISSGEVDQSDGSFLSEKQEKKYILTCCSYPKSDCTIETGYEDKILEDFEIELAETGLEFFN-----lPRSGE 
         :                                                                                                                          
 4n59(A) : ATYKVKDVTTGAEIEVPDDKYILDEFEKQGVNLPYSCRAGACSSCVALISSGEVDQSDGSFLSEKQEKKYILTCCSYPKSDCTIETGYEDKILEDFEIELAETGLEFFNDLKDSLPRSGE 
           ____________________________________________________________________________________________________104_________________ 

           ________________________________________________________________________________________________________________________ 
 4n58(A) : ILSGVTAPFEAFDHYLFGNGVERSININDVGFNINVSQIPPIMSLLNGKNVGRFDIGSDFVRNTALDGYSVAAYLGNITMRTEGVLNVKSDGTWQYEGVIRSYNDTYDANPSTHRGALGE 
         :                                                                                                                          
 4n59(A) : ILSGVTAPFEAFDHYLFGNGVERSININDVGFNINVSQIPPIMSLLNGKNVGRFDIGSDFVRNTALDGYSVAAYLGNITMRTEGVLNVKSDGTWQYEGVIRSYNDTYDANPSTHRGALGE 
           ________________________________________________________________________________________________________________________ 

           _______________________________                                                                                          
 4n58(A) : WATGVLNNLSGTPYEIRIPGELKIKENGKKL                                                                                          
         :                                                                                                                          
 4n59(A) : W--------sGTPYEIRIPGELKIKENGKK*                                                                                          
           _______________________________                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		85.6
Translation
(A) 		5.0
Closure
(%) 		99.9
Bending Residues
( green ) 		  104 - 118
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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