Peptidyl-Prolyl Cis-Trans Isomerase Slyd

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Peptidyl-Prolyl Cis-Trans Isomerase Slyd
  Conformer 1
(PDB) 		4odk (A)
  Conformer 2
(PDB) 		4odm (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 93 0.59   3 - 65   119 - 148
2 50 0.49   66 - 118

Sequence


           ______________________________________________________________64___________________________________________________118__ 
 4odk(A) : MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQD---nPMPLTVVAVEGEEVTVDFNHP 
         :                                                                                                                          
 4odm(D) : MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHP 
           ______________________________________________________________64___________________________________________________118__ 

           ____________________________________                                                                                     
 4odk(A) : LAGKDLDFQVEVVKVREATPEELLHGHAHPSGHHHH                                                                                     
         :                                                                                                                          
 4odm(D) : LAGKDLDFQVEVVKVREATPEELLHGHAHL******                                                                                     
           ____________________________________                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		32.9
Translation
(A) 		0.7
Closure
(%) 		32.3
Bending Residues
( green ) 		  64 - 66
  118 - 123
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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