Probable Aspartokinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Probable Aspartokinase
  Conformer 1
(PDB) 		3c1m (A)
  Conformer 2
(PDB) 		3c1n (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 296 1.32   4 - 234   249 - 298   413 - 420   440 - 447
2 158 1.83   235 - 248   299 - 412   421 - 439   448 - 467

Sequence


           ________________________________________________________________________________________________________________________ 
 3c1m(A) : TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKS 
         :                                                                                                                          
 3c1n(A) : TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYKAIEEAI-sEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKS 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________________234_______ 
 3c1m(A) : RDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPR 
         :                                                                                                                          
 3c1n(A) : RDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPR 
           ______________________________________________________________________________________________________________234_______ 

           ____248_______________________________________________298_______________________________________________________________ 
 3c1m(A) : LVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNI 
         :                                                                                                                          
 3c1n(A) : LVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDM---dSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNI 
           ____248_______________________________________________298_______________________________________________________________ 

           ____________________________________________412_____420________________439____446________________________                
 3c1m(A) : SLVVSEEDVDKALKALKREFGDsFLNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIEK                
         :                                                                                                                          
 3c1n(A) : SLVVSEEDVDKALKALKREFGD--lNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIE*                
           ____________________________________________412_____420________________439____446________________________                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		18.9
Translation
(A) 		1.3
Closure
(%) 		42.6
Bending Residues
( green ) 		  234 - 235
  248 - 249
  298 - 299
  412 - 417
  420 - 421
  439 - 440
  446 - 448
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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