Protein (Glycosylase)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Glycosylase)
  Conformer 1
(PDB) 		1eug (A)
  Conformer 2
(PDB) 		1flz (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 111 0.73   61 - 65   79 - 85   87 - 116   151 - 166   172 - 215   217 - 225
2 106 0.88   9 - 60   66 - 78   86 - 86   117 - 150   167 - 171   216 - 216

Sequence


           _________________________________________________________60________________78_____85____________________________116_____ 
 1eug(A) : ***LTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLL 
         :                                                                                                                          
 1flz(A) : ANELTWHDVLAEEKQQPHFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLL 
           _________________________________________________________60________________78_____85____________________________116_____ 

           __________________________150_____________166__171_________________________________________215______________             
 1eug(A) : LNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQHGETPIDWMPVLPAESE             
         :                                                                                                                          
 1flz(A) : LNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQHGETPIDWMPVLPAESE             
           __________________________150_____________166__171_________________________________________215______________             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.9
Translation
(A) 		0.1
Closure
(%) 		85.8
Bending Residues
( green ) 		  60 - 66
  78 - 79
  85 - 87
  116 - 117
  150 - 151
  166 - 167
  171 - 172
  215 - 217
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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