DynDom - Protein Domain Motions

Protein-Glutamine Gamma-Glutamyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Protein-Glutamine Gamma-Glutamyltransferase
Conformer 1 (PDB)	1kv3 (A)
Conformer 2 (PDB)	2q3z (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	407	3.86	17 - 473
2	208	1.74	474 - 681

Sequence

`________________________________________________________________________________________________________________________` `1kv3(A) : ************ETNGRDHHTADLCREKLVVRRGQPFWLTL------------sLTFSVVTGPAPSQEAGTKARFPLRDAVEEGDWTATVVDQQDCTLSLQLTTPANAPIGLYRLSLE` `:` `2q3z(A) : MAEELVLERCDLELETNGRDHHTADLCREKLVVRRGQPFWLTLHFEGRNYQASVDSLTFSVVTGPAPSQEAGTKARFPLRDAVEEGDWTATVVDQQDCTLSLQLTTPANAPIGLYRLSLE` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1kv3(A) : AS----------gHFILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFQDGILDICLILLDVNPKFLKNAGRDCSRRSSPVYVGRVGSGMVNCNDDQGVLLGR` `:` `2q3z(A) : ASTGYQGSSFVLGHFILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFQDGILDICLILLDVNPKFLKNAGRDCSRRSSPVYVGRVGSGMVNCNDDQGVLLGR` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1kv3(A) : WDNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYEGWQALDPT` `:` `2q3z(A) : WDNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHD--sNLLIEYFRN---------sEMIWNFHCWVESWMTRPDLQPGYEGWQALDPT` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________459_____________________` `1kv3(A) : PQEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQQDDGSVHKSINRSLIVGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTRANHLNKLAEKEETGMAMRIRVG` `:` `2q3z(A) : PQEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQ-------kSINRSLIVGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTRANH----------gMAMRIRVG` `________________________________________________________________________________________________459_____________________` `________________________________________________________________________________________________________________________` `1kv3(A) : QSMNMGSDFDVFAHITNNTAEEYVCRLLLCARTVSYNGILGPECGTKYLLNLTLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYLENPEIKIRILGEPKQK` `:` `2q3z(A) : QSMNMGSDFDVFAHITNNTAEEYVCRLLLCARTVSYNGILGPECGTKYLLNLTLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYLENPEIKIRILGEPKQK` `________________________________________________________________________________________________________________________` `_______________________________________________________________________________________` `1kv3(A) : RKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVKVRMDLVPLHMGLHKLVVNFESDKLKAVKGFRNVIIGPA` `:` `2q3z(A) : RKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVKVRMDLVPLHMGLHKLVVNFESDKLKAVKGFRNVI**` `_______________________________________________________________________________________`

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	160.5
Translation (A)	-2.7
Closure (%)	80.5
Bending Residues ( green )	459 - 474
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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