Protein (Arrestin)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Arrestin)
  Conformer 1
(PDB) 		1cf1 (A)
  Conformer 2
(PDB) 		4j2q (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 177 2.92   177 - 295   299 - 319   321 - 322   324 - 358
2 165 2.22   12 - 176   296 - 298   320 - 320   323 - 323

Sequence


           ________________________________________________________________________________________________________________________ 
 1cf1(A) : HVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCS 
         :                                                                                                                          
 4j2q(B) : HVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCS 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________176_________________________________________________________________________ 
 1cf1(A) : VMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVL 
         :                                                                                                                          
 4j2q(B) : VMLQPAPQDVGKSCGVDFEIKAFATHSTD-----iPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVL 
           ____________________________________________176_________________________________________________________________________ 

           ___________________________________________295____________________318___________________________________________________ 
 1cf1(A) : YSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQPEDnFVFEEF 
         :                                                                                                                          
 4j2q(B) : YSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQP********* 
           ___________________________________________295____________________318___________________________________________________ 

           _____________                                                                                                            
 1cf1(A) : ARQNLKDAGEYKE                                                                                                            
         :                                                                                                                          
 4j2q(B) : *************                                                                                                            
           _____________                                                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.0
Translation
(A) 		-1.8
Closure
(%) 		35.4
Bending Residues
( green ) 		  176 - 177
  295 - 302
  318 - 324
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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