Replication Initiation Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Replication Initiation Protein
  Conformer 1
(PDB) 		2z9o (A)
  Conformer 2
(PDB) 		1rep (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 103 3.6   23 - 29   32 - 148
2 98 2.4   30 - 31   149 - 244

Sequence


           __________26____________________________________________________________________________________________________________ 
 2z9o(A) : ******SNDLTEAAYSLSRDQKRMLYLFVDQIR---dGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFI 
         :                                                                                                                          
 1rep(C) : SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKShDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFY------------eSFPWFIKPAHSPSRGLYSVHINPYLIPFFI 
           __________26____________________________________________________________________________________________________________ 

           ___146_________________________________________________________________________________________________________          
 2z9o(A) : GLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG          
         :                                                                                                                          
 1rep(C) : GLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT*****          
           ___146_________________________________________________________________________________________________________          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		48.0
Translation
(A) 		-4.7
Closure
(%) 		21.5
Bending Residues
( green ) 		  26 - 32
  146 - 149
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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