Rig-I Helicase Domain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Rig-I Helicase Domain
  Conformer 1
(PDB) 		3tbk (A)
  Conformer 2
(PDB) 		4a2w (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 240 2.33   455 - 754   758 - 759
2 227 1.1   245 - 454   755 - 757   760 - 785

Sequence


           ________________________________________________________________________________________________________________________ 
 3tbk(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 4a2w(A) : GTADEKRSLQCYRRYIERSLNPVYVLGNMTDWLPDELRERIRKEEERGVSGAAALFLDAVLQLEARGWFRGMLDAMLAAGYTGLAEAIENWDFSKLEKLELHRQLLKRIEATMLEVDPVA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3tbk(A) : ***************************************************************SPLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVF 
         :                                                                                                                          
 4a2w(A) : LIPYISTCLIDRECEEIQQISENRSKAAGITKLIECLCRSDKEHWPKSLQLALDTTGYYRASELWDkARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVF 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3tbk(A) : FANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTL-iFDECHNTSKNHPYNQIf-RYLDHKLGESRDPLPQVVGLTASVGVG 
         :                                                                                                                          
 4a2w(A) : LATKVPVYEQQKNVFKHHFERQGYSVQGISGE-----sVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN-SASQLPQILGLTASVGVG 
           ________________________________________________________________________________________________________________________ 

           _______________________________450______________________________________________________________________________________ 
 3tbk(A) : DAKTAEEA-qHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQL-kETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQ-aDKEEESRVC 
         :                                                                                                                          
 4a2w(A) : NAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTI-------------dFGTQNYEHWIVVTQRKCRLLQLEDKEEESRIC 
           _______________________________451______________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3tbk(A) : KALFLYTSHLRKYNDALIISEDAQt-DALNYLKAFFHDVR-----eTERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSF 
         :                                                                                                                          
 4a2w(A) : RALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNY 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________754________________________________________          
 3tbk(A) : LKPGILTGdNNILIATSVADEGIDIAECNLVILYEYVGNVIKiQTRGRGRARDSKCFLLTSSADVIEKEKAN-iKEKI-nESILRLQTWDEk-FGKTVHRIQVNEKLLRDS          
         :                                                                                                                          
 4a2w(A) : IKPGVL--dNRLLIATSV------iVQCNLVVLYEYSGNVTKMIQVg------SKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKERVLRDS          
           ____________________________________________________________________754________________________________________          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		18.8
Translation
(A) 		-0.8
Closure
(%) 		29.5
Bending Residues
( green ) 		  450 - 457
  754 - 761
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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