S-Arrestin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name S-Arrestin
  Conformer 1
(PDB) 		3ugx (D)
  Conformer 2
(PDB) 		4j2q (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 157 2.29   14 - 180   296 - 296   324 - 325
2 153 2.35   196 - 295   297 - 323   326 - 356

Sequence


           ________________________________________________________________________________________________________________________ 
 3ugx(D) : NHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPV-----tTRLQESLIKKLGANTYPFLLTFPDYLPC 
         :                                                                                                                          
 4j2q(A) : *HVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDID-mGLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPC 
           ________________________________________________________________________________________________________________________ 

           ________________________________________178_____________________________________________________________________________ 
 3ugx(D) : SVMLQPAPQDVGKSCGVDFEIKAFATdKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYY 
         :                                                                                                                          
 4j2q(A) : SVMLQPAPQDVGKSCGVDFEIKAFATHkIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYY 
           ________________________________________178_____________________________________________________________________________ 

           _____________________________________295_________________________323_______________________________________________      
 3ugx(D) : IKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSG--tSSEVATEVPFRLMHPQPEnFVFEEFARQNL      
         :                                                                                                                          
 4j2q(A) : IKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLlTSSEVATEVPFRLMHPQP*************      
           _____________________________________295_________________________323_______________________________________________      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		18.9
Translation
(A) 		-1.7
Closure
(%) 		47.5
Bending Residues
( green ) 		  178 - 196
  295 - 304
  323 - 326
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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