Tryptophan Synthase Beta Chain 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tryptophan Synthase Beta Chain 1
  Conformer 1
(PDB) 		5e0k (B)
  Conformer 2
(PDB) 		6amc (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 282 0.48   3 - 17   24 - 88   121 - 121   182 - 383
2 98 0.34   18 - 23   89 - 120   122 - 181

Sequence


           __________12______20_________________________________________________________________88_____________________________120_ 
 5e0k(B) : MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHtNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALL 
         :                                                                                                                          
 6amc(A) : MWFGEFGGQYVPETLIGPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKVYLKREDLVHGGAHtNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALL 
           __________12______20_________________________________________________________________88_____________________________120_ 

           _________________________________________________________181____________________________________________________________ 
 5e0k(B) : GMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN 
         :                                                                                                                          
 6amc(A) : GMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN 
           _________________________________________________________181____________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5e0k(B) : DKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMS 
         :                                                                                                                          
 6amc(A) : DKKVKLVGVEAGGKGLESGKHSASLNAGQVGVSHGMLSYFLQDEEGQIKPSHSIAPGLDYPGVGPEHAYLKKIQRAEYVAVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMS 
           ________________________________________________________________________________________________________________________ 

           __________________________                                                                                               
 5e0k(B) : RDEIIIVNLSGRGDKDLDIVLKVS**                                                                                               
         :                                                                                                                          
 6amc(A) : RDEIIIVNLSGRGDKDLDIVLKVSGN                                                                                               
           __________________________                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.3
Translation
(A) 		0.0
Closure
(%) 		93.8
Bending Residues
( green ) 		  12 - 18
  20 - 24
  88 - 89
  120 - 122
  181 - 182
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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