Udp-Glucose 6-Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-Glucose 6-Dehydrogenase
  Conformer 1
(PDB) 		2q3e (A)
  Conformer 2
(PDB) 		2o3j (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 240 0.86   98 - 99   102 - 102   104 - 105   107 - 107   223 - 464
2 212 0.86   3 - 97   100 - 101   103 - 103   106 - 106   108 - 222

Sequence


           _____________________________________________________________________________________________92_________________________ 
 2q3e(A) : ***MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIV 
         :                                                                                                                          
 2o3j(A) : DQVFGKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIA 
           _____________________________________________________________________________________________97_________________________ 

           ______________________________________________________________________________________________________222_______________ 
 2q3e(A) : QNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSI 
         :                                                                                                                          
 2o3j(A) : QYAGGPKIVVEKSTVPVKAAESIGCILREAQK--lKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSI 
           ______________________________________________________________________________________________________229_______________ 

           ________________________________________________________________________________________________________________________ 
 2q3e(A) : SALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYL 
         :                                                                                                                          
 2o3j(A) : SAVCEATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHL 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________________            
 2q3e(A) : MDEGAHLHIYDPKVPREQIVVDL----SHdQVSRLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKV**            
         :                                                                                                                          
 2o3j(A) : MEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILD--QKALREIGFRTFAIGTSPDQ            
           _____________________________________________________________________________________________________________            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.3
Translation
(A) 		0.3
Closure
(%) 		91.1
Bending Residues
( green ) 		  92 - 108
  222 - 223
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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