Udp-N-Acetylglucosamine 1-Carboxyvinyl-Transferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-N-Acetylglucosamine 1-Carboxyvinyl-Transferase
  Conformer 1
(PDB) 		1naw (B)
  Conformer 2
(PDB) 		1uae  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 207 0.56   3 - 19   45 - 45   190 - 190   229 - 416
2 207 2.45   20 - 44   46 - 189   191 - 228

Sequence


           _________________19_______________________44____________________________________________________________________________ 
 1naw(B) : MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERNGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGAR 
         :                                                                                                                          
 1uae    : MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTIGAR 
           _________________19_______________________44____________________________________________________________________________ 

           __________________________________________________________________189____________________________________228____________ 
 1naw(B) : PVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLV 
         :                                                                                                                          
 1uae    : PVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDKVSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGVERLGGGVYRVLPDRIETGTFLV 
           __________________________________________________________________189____________________________________228____________ 

           ________________________________________________________________________________________________________________________ 
 1naw(B) : AAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKL 
         :                                                                                                                          
 1uae    : AAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVGEDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHVPELSRMGAHAEIESNTVICHGVEKL 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________                                                              
 1naw(B) : SGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE                                                              
         :                                                                                                                          
 1uae    : SGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKG*                                                              
           ___________________________________________________________                                                              

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.2
Translation
(A) 		0.7
Closure
(%) 		93.5
Bending Residues
( green ) 		  19 - 20
  44 - 46
  189 - 191
  228 - 229
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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