D-Maltodextrin-Binding Protein 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Maltodextrin-Binding Protein 3
  Conformer 1
(PDB) 		1omp  
  Conformer 2
(PDB) 		4mbp  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 23 0.76   169 - 184   335 - 341
2 175 0.43   111 - 168   185 - 260   314 - 327   342 - 368
3 163 0.58   3 - 110   261 - 312   328 - 330

Sequence


           __________________________________________________________________________________________________________109___________ 
 1omp    : KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
         :                                                                                                                          
 4mbp    : KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
           __________________________________________________________________________________________________________109___________ 

           _____________________________________________168_____________184________________________________________________________ 
 1omp    : LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 
         :                                                                                                                          
 4mbp    : LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 
           _____________________________________________168_____________184________________________________________________________ 

           ______________257___________________________________________________311______________328__________341___________________ 
 1omp    : NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEA 
         :                                                                                                                          
 4mbp    : NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEA 
           ______________257___________________________________________________311______________328__________341___________________ 

           __________                                                                                                               
 1omp    : LKDAQTRITK                                                                                                               
         :                                                                                                                          
 4mbp    : LKDAQTRITK                                                                                                               
           __________                                                                                                               

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.0
Translation
(A) 		0.2
Closure
(%) 		50.8
Bending Residues
( green ) 		  6 - 8
  18 - 24
  39 - 40
  48 - 49
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		23.5
Translation
(A) 		1.7
Closure
(%) 		99.9
Bending Residues
( green ) 		  172 - 174
  214 - 231
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge
Nitrogenase Molybdenum-Iron Protein alpha cha

PyMOL Script

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