Archaeosine Trna-Guanine Transglycosylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Archaeosine Trna-Guanine Transglycosylase
  Conformer 1
(PDB)
1iq8 (B)
  Conformer 2
(PDB)
1iq8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 368 0.38   8 - 357   366 - 369   371 - 379   401 - 404   421 - 421
2 205 0.49   358 - 365   370 - 370   380 - 400   405 - 420   422 - 580

Sequence


           ________________________________________________________________________________________________________________________ 
 1iq8(B) : KMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQMVVEPKELEKMGFEIIITNSYIIYKDEELRRKALELGIHRMLDYNGIIEVDSGSFQLMKYGSIEVSNREIIEFQHRIGVDI 
         :                                                                                                                          
 1iq8(A) : KMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQMVVEPKELEKMGFEIIITNSYIIYKDEELRRKALELGIHRMLDYNGIIEVDSGSFQLMKYGSIEVSNREIIEFQHRIGVDI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1iq8(B) : GTFLDIPTPPDAPREQAVKELEITLSRAREAEEIKEIPMNATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMALRPDRPVHLFGAGHPIVFALAVAMGV 
         :                                                                                                                          
 1iq8(A) : GTFLDIPTPPDAPREQAVKELEITLSRAREAEEIKEIPMNATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMALRPDRPVHLFGAGHPIVFALAVAMGV 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________________357_____365 
 1iq8(B) : DLFDSASYALYAKDDRYMTPEGTKRLDELDYFPCSCPVCSKYTPQELREMPKEERTRLLALHNLWVIKEEIKRVKQAIKEGELWRLVDERARSHPKLYSAYKRLLEHYTFLEEFEPITKK 
         :                                                                                                                          
 1iq8(A) : DLFDSASYALYAKDDRYMTPEGTKRLDELDYFPCSCPVCSKYTPQELREMPKEERTRLLALHNLWVIKEEIKRVKQAIKEGELWRLVDERARSHPKLYSAYKRLLEHYTFLEEFEPITKK 
           _____________________________________________________________________________________________________________357_____365 

           _369_______379__________________400_404_____________420_________________________________________________________________ 
 1iq8(B) : SALFKISNESLRWPVVRRAKERAKSINERFGELVEHPIFGRVSRYLSLTYPFAQSEAEDDFKIEKPTKEDAIKYVMAIAEYQFGEGASRAFDDAKVELSKTGMPRQVKVNGKRLATVRAD 
         :                                                                                                                          
 1iq8(A) : SALFKISNESLRWPVVRRAKERAKSINERFGELVEHPIFGRVSRYLSLTYPFAQSEAEDDFKIEKPTKEDAIKYVMAIAEYQFGEGASRAFDDAKVELSKTGMPRQVKVNGKRLATVRAD 
           _369_______379__________________400_404_____________420_________________________________________________________________ 

           _________________________________________________________________________________________________                        
 1iq8(B) : DGLLTLGIEGAKRLHRVLPYPRMRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLATGQALLSGREMIVFQYGRAVKVRKGVE                        
         :                                                                                                                          
 1iq8(A) : DGLLTLGIEGAKRLHRVLPYPRMRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLATGQALLSGREMIVFQYGRAVKVRKGVE                        
           _________________________________________________________________________________________________                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.8
Translation
(A)
0.3
Closure
(%)
89.8
Bending Residues
( green )
  357 - 358
  365 - 366
  369 - 371
  379 - 380
  400 - 401
  404 - 405
  420 - 422
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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