Chitinase B

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chitinase B
  Conformer 1
(PDB)
1e6z (B)
  Conformer 2
(PDB)
1e6n (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 419 0.5   5 - 242   260 - 440
2 73 0.74   243 - 259   441 - 496

Sequence


           ________________________________________________________________________________________________________________________ 
 1e6z(B) : STRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRA 
         :                                                                                                                          
 1e6n(A) : *TRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRA 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________________________24 
 1e6z(B) : KFAQSCVRIMKDYGFDGVDIDWEYPQAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEAVTNHQAALFGDAAGPTFYN 
         :                                                                                                                          
 1e6n(A) : KFAQSCVRIMKDYGFDGVDIDWQYPQAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYN 
           ______________________________________________________________________________________________________________________24 

           2______________259______________________________________________________________________________________________________ 
 1e6z(B) : ALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 
         :                                                                                                                          
 1e6n(A) : ALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCAECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 
           2______________259______________________________________________________________________________________________________ 

           ____________________________________________________________________________440_________________________________________ 
 1e6z(B) : KTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPGNLPIMTAPAYVPGTTYAQGALVSYQGYVWQTKWGY 
         :                                                                                                                          
 1e6n(A) : KTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPGNLPIMTAPAYVPGTTYAQGALVSYQGYVWQTKWGA 
           ____________________________________________________________________________440_________________________________________ 

           __________________                                                                                                       
 1e6z(B) : ITSAPGSDSAWLKVGRVA                                                                                                       
         :                                                                                                                          
 1e6n(A) : ITSAPGSDSAWLKVGRV*                                                                                                       
           __________________                                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.8
Translation
(A)
0.9
Closure
(%)
99.7
Bending Residues
( green )
  242 - 243
  259 - 260
  440 - 441
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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