Farnesyl Pyrophosphate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Farnesyl Pyrophosphate Synthase
  Conformer 1
(PDB)
1yhk (A)
  Conformer 2
(PDB)
1yhl (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 278 0.49   3 - 13   45 - 87   135 - 358
2 78 0.37   14 - 44   88 - 134

Sequence


           ___________13_____________________________44_________________________________________87_________________________________ 
 1yhk(A) : MASMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVT 
         :                                                                                                                          
 1yhl(A) : MASMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVT 
           ___________13_____________________________44_________________________________________87_________________________________ 

           ___________134__________________________________________________________________________________________________________ 
 1yhk(A) : TQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAH 
         :                                                                                                                          
 1yhl(A) : TQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAH 
           ___________134__________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1yhk(A) : LIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKR 
         :                                                                                                                          
 1yhl(A) : LIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKR 
           ________________________________________________________________________________________________________________________ 

           __                                                                                                                       
 1yhk(A) : **                                                                                                                       
         :                                                                                                                          
 1yhl(A) : KK                                                                                                                       
           __                                                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.8
Translation
(A)
-0.1
Closure
(%)
93.4
Bending Residues
( green )
  13 - 14
  44 - 45
  87 - 88
  134 - 135
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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