Glycine Betaine-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycine Betaine-Binding Protein
  Conformer 1
(PDB)
2b4l (A)
  Conformer 2
(PDB)
2b4m (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 154 0.36   96 - 249
2 106 0.41   11 - 95   250 - 270

Sequence


           _________________________________________________________________________________________95_____________________________ 
 2b4l(A) : DENASAAEQVNKTIIGIDPGSGIMSLTDKAMKDYDLNDWTLISASSAAMTATLKKSYDRKKPIIITGWTPHWMFSRYKLKYLDDPKQSYGSAEEIHTITRKGFSKEQPNAAKLLSQFKWT 
         :                                                                                                                          
 2b4m(B) : ****SAAEQVNKTIIGIDPGSGIMSLTDKAMKDYDLNDWTLISASSAAMTATLKKSYDRKKPIIITGWTPHWMFSRYKLKYLDDPKQSYGSAEEIHTITRKGFSKEQPNAAKLLSQFKWT 
           _________________________________________________________________________________________95_____________________________ 

           ________________________________________________________________________________________________________________________ 
 2b4l(A) : QDEMGEIMIKVEEGEKPAKVAAEYVNKHKDQIAEWTKGVQKVKGDKINLAYVAWDSEIASTNVIGKVLEDLGYEVTLTQVEAGPMWTAIATGSADASLSAWLPNTHKAYAAKYKGKYDDI 
         :                                                                                                                          
 2b4m(B) : QDEMGEIMIKVEEGEKPAKVAAEYVNKHKDQIAEWTKGVQKVKGDKINLAYVAWDSEIASTNVIGKVLEDLGYEVTLTQVEAGPMWTAIATGSADASLSAWLPNTHKAYAAKYKGKYDDI 
           ________________________________________________________________________________________________________________________ 

           __249_______________________                                                                                             
 2b4l(A) : GTSMTGVKMGLVVPQYMKNVNSIEDLKK                                                                                             
         :                                                                                                                          
 2b4m(B) : GTSMTGVKMGLVVPQYMKNVNSIEDLKK                                                                                             
           __249_______________________                                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.0
Translation
(A)
0.1
Closure
(%)
100.0
Bending Residues
( green )
  95 - 96
  249 - 250
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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