Groel

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Groel
  Conformer 1
(PDB)
1aon (G)
  Conformer 2
(PDB)
1xck (N)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 337 3.05   4 - 190   374 - 523
2 183 1.69   191 - 373

Sequence


           ________________________________________________________________________________________________________________________ 
 1aon(G) : AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 
         :                                                                                                                          
 1xck(N) : AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________187______________________________________________________ 
 1aon(G) : KAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 
         :                                                                                                                          
 1xck(N) : KAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 
           _______________________________________________________________187______________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1aon(G) : KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 
         :                                                                                                                          
 1xck(N) : KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 
           ________________________________________________________________________________________________________________________ 

           _________373____________________________________________________________________________________________________________ 
 1aon(G) : REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 
         :                                                                                                                          
 1xck(N) : REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 
           _________373____________________________________________________________________________________________________________ 

           ____________________________________________                                                                             
 1aon(G) : TEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLP                                                                             
         :                                                                                                                          
 1xck(N) : TEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLP                                                                             
           ____________________________________________                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
84.5
Translation
(A)
6.2
Closure
(%)
88.1
Bending Residues
( green )
  187 - 193
  373 - 378
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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