H-2 Class I Histocompatibility Antigen D-B Alpha Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name H-2 Class I Histocompatibility Antigen D-B Alpha Chain
  Conformer 1
(PDB)
2cii (A)
  Conformer 2
(PDB)
1ffo (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 173 0.7   4 - 176
2 96 0.85   177 - 272

Sequence


           ________________________________________________________________________________________________________________________ 
 2cii(A) : GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEG 
         :                                                                                                                          
 1ffo(D) : *PHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEG 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________176________________________________________________________________ 
 2cii(A) : RDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWALNGEELTQDMELVETRPAGDGT 
         :                                                                                                                          
 1ffo(D) : RDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT 
           _____________________________________________________176________________________________________________________________ 

           ___________________________________                                                                                      
 2cii(A) : FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWE                                                                                      
         :                                                                                                                          
 1ffo(D) : FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRW*                                                                                      
           ___________________________________                                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.9
Translation
(A)
2.0
Closure
(%)
95.7
Bending Residues
( green )
  176 - 181
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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