Heavy Chain Of Neutralizing Antibody

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Heavy Chain Of Neutralizing Antibody
  Conformer 1
(PDB)
1cz8 (Y)
  Conformer 2
(PDB)
1bj1 (H)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 121 0.25   3 - 123
2 93 0.48   124 - 222

Sequence


           _______________________________________________________________________________________________________________________1 
 1cz8(Y) : EVQLVESGGGLVQPGGSLRLSCAASGYDFTHYGMNWVRQAPGKGLEWVGWINTYTGEPTYAADFKRRFTFSLDTSKSTAYLQMNSLRAEDTAVYYCAKYPYYYGTSHWYFDVWGQGTLVT 
         :                                                                                                                          
 1bj1(H) : EVQLVESGGGLVQPGGSLRLSCAASGYTFTNYGMNWVRQAPGKGLEWVGWINTYTGEPTYAADFKRRFTFSLDTSKSTAYLQMNSLRAEDTAVYYCAKYPHYYGSSHWYFDVWGQGTLVT 
           _______________________________________________________________________________________________________________________1 

           22________________________________________________________________________________________________                       
 1cz8(Y) : VSSASTKGPSVFPLAPSgTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK                       
         :                                                                                                                          
 1bj1(H) : VSSASTKGPSVFPLAPSgTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK                       
           22________________________________________________________________________________________________                       

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.7
Translation
(A)
0.2
Closure
(%)
90.5
Bending Residues
( green )
  122 - 124
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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